Refusing to let the loss of the Wolfpack deter him from his service, he inspired loyalty amongst his men. While confronting the Malevolence in the Abregado system, all the troopers from the Wolfpack who were on board the ship were eliminated, save for Koon, Wolffe, Clone Sergeant 'Sinker,' and trooper CT-4860 'Boost.' The four were rescued by Jedi General Anakin Skywalker and his Padawan, Ahsoka Tano, and Wolffe had his unit adopt new clone trooper armor in honor of his fallen comrades.

On his first mission with Koon, Wolffe served on board the Jedi Master's flagship, the Triumphant, when Koon led a task force to eliminate the Separatist warship Malevolence. The leader of the 104th Battalion's famed Wolfpack squad, Commander Wolffe proved to be tireless in his efforts against the Confederacy of Independent Systems, displaying an affinity for strategy. Wolffe, formerly designated CC-3636, was a veteran Clone Commander in the Grand Army of the Republic who served with Jedi General Plo Koon during the Clone Wars.

Commander wolffe